rs37140274 SNP Detail

Summary

• ID
  rs37140274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34724320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC TCTGCTGCCC TATCTCGATT
  Y
  CTAGCCACCT GTTTCTACGG AGTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss50776009	NES13546799	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs37140274					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50776009	NES13546799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34724320 () rs orientation: forward

Symbol	Name	Function Class
Rr394346	regulatory region 394346	1396 bp downstream
Rr546785	regulatory region 546785	within coordinates
Rr546786	regulatory region 546786	359 bp proximal
Rr546787	regulatory region 546787	1152 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	Intron
Tssr156164	transcription start site region 156164	607 bp downstream
Tssr159005	transcription start site region 159005	180 bp downstream
Tssr159006	transcription start site region 159006	213 bp downstream
Tssr159007	transcription start site region 159007	274 bp downstream
Tssr159008	transcription start site region 159008	303 bp downstream
Tssr159009	transcription start site region 159009	371 bp downstream
Tssr159010	transcription start site region 159010	401 bp downstream
Tssr159011	transcription start site region 159011	514 bp downstream
Tssr159012	transcription start site region 159012	533 bp downstream
Tssr159013	transcription start site region 159013	563 bp downstream