rs37139554 SNP Detail

Summary

• ID
  rs37139554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57512480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTAAA TTTCTTAATT
  GGCTAATGGA AGGAAGGGAA GGATTTCTTG GATGATAAAC TAGACTGACT TCTCTGTTGA
  TTATGATCTC CAGAACAAGC AATTAGGGAA GCCACAGTCT CTTCCACTCC TGGAAATTCT
  CGGAAAATAA AAAAAAATCA ACCGCAGCTG GCCAAATGGA GACCCGGAGG AGTGTATTTC
  Y
  GATGATTGAC AGCAACACTA GCCAGTTGGT GCTCTGAAAG ACTCTTTGCC CGCCCTCAAT
  CTGAGCCAAT TACAGATTTA GATAGGAACG AGCCTCCTGC ACAGGCAATT TGACCTCTCA
  GATTGCCAAT TAAACGCCGT AGAGCGACGT CAAAGTGGGC CAGTAGCTGT TCGACGTTGG
  CGCCCCGCCC TCCTGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51315105	NES13763483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37139554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315105	NES13763483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57512480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17483	CpG island 17483			235 bp distal
Cpgi17484	CpG island 17484			36 bp proximal
Gm45193	predicted gene 45193			within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)			mRNA-UTR
				Noncoding-Transcript-Variant
Rr399669	regulatory region 399669			within coordinates
Rr631141	regulatory region 631141			80 bp distal
Rr631142	regulatory region 631142			within coordinates
Tssr61156	transcription start site region 61156			100 bp upstream
Tssr61157	transcription start site region 61157			74 bp upstream
Tssr61158	transcription start site region 61158			48 bp upstream
Tssr61159	transcription start site region 61159			within coordinates
Tssr61160	transcription start site region 61160			4 bp downstream