rs3713085 SNP Detail

Summary

• ID
  rs3713085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGTGACTA AGTGTTTGTC CTTGGATGGG TGGTGGCAGC
  AGGCATCCAT CCTTTCTTCA TATCAGCCTT TAAATTTTAT GACATTATAA TGCTTGATAT
  M
  ATTTATATGC ATTTCTAAAA GCCACAGTGA TTTATTTCTA GTGGGGAGTC TTCAATCAAC
  TGGGATTAGA GGGTTAAAAT CTCTTTCTTA AGAAACAGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5089335	WI_WGS_2_76886131	WI	MOUSE	f	SNP			C	A
ss45227924	mCV23799713	ABI	CRAMUS_MOUSE	f	SNP	C	C			C
ss146769932	ENSMUSSNP1726743	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss320352421	CHEV_2_75856592	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3713085					SNP	C	C	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848879 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	440 bp downstream
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1123 bp distal