rs3712883 SNP Detail

Summary

• ID
  rs3712883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76237108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTATTAT ATCTGCTGTA AATTAATATA TTATGTATGA
  CTTTATTACA CTGAGCATAT AAGCACTTGC ATATTTTAGT GGCAGACTAA ATAATAGTAG
  Y
  TATTATAAAT GATTGCCATA ATACTATTCT GTGATTCTCA TAGAAACCAA TCACAAATTA
  TAGCATGAAT CTATAGCTTG TATTATAAAA CAGATCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5089133	WI_WGS_4_73594430	WI	MOUSE	f	SNP	T		C
ss146585097	ENSMUSSNP3485822	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs3712883					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76237108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			666 bp distal
Rr594083	regulatory region 594083			825 bp distal
Rr594084	regulatory region 594084			1037 bp proximal