rs3712760 SNP Detail

Summary

• ID
  rs3712760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4748196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCT GTACTAATGG GCGCTTCATG
  Y
  GCTACGATGT ACTAATGAGC GCTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss5089010	WI_WGS_6_4453197	WI	MOUSE	f	SNP	C			T
ss45945514	mCV23063956	ABI	CRAMUS_MOUSE	f	SNP		C	C	T
ss132932632	ENSMUSSNP529062	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss321727774	CHEV_6_4698196	CHEVERUD	SCREENING_POP	f	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs3712760					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4748196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17126	CpG island 17126	within coordinates
Peg10	paternally expressed 10	Intron
Rr626054	regulatory region 626054	1091 bp distal
Rr626055	regulatory region 626055	780 bp distal
Rr626056	regulatory region 626056	980 bp distal
Rr626057	regulatory region 626057	within coordinates
Sgce	sarcoglycan, epsilon	1016 bp upstream
Tssr1771	transcription start site region 1771	842 bp downstream
Tssr1772	transcription start site region 1772	755 bp downstream
Tssr1773	transcription start site region 1773	744 bp downstream
Tssr54763	transcription start site region 54763	824 bp downstream
Tssr54764	transcription start site region 54764	583 bp downstream
Tssr59724	transcription start site region 59724	1801 bp upstream
Tssr59725	transcription start site region 59725	1166 bp upstream
Tssr59726	transcription start site region 59726	1140 bp upstream
Tssr59727	transcription start site region 59727	1064 bp upstream
Tssr59728	transcription start site region 59728	1012 bp upstream