AAACCCGAGA TTTTGGAAGT GCGTGATTTG GGTGCTTTAA GGCATGGCTT CAGAACTCAG CTAAGAACCG GGGCCTGCTA GCAACTTGGA GTGACATCAC Y GTCAGGTGTC AGGAGCCTTG TGTAAGCTCA CTAGTTGTGA ACTCCTGCTG ATGCCCTCTG AAAACCCAGG ACACCCCCAA TTCTTGGAGC AAGAACACT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50501558 | NES13695679 | PERLEGEN | MM_PANEL2 | f | SNP | C | T | C | C | T | C | C | C |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | CAST/EiJ |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs37127192 | SNP | C | T | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50501558 | NES13695679 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr18:77591432 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 1190 bp distal | ||||||
Rr541132 | regulatory region 541132 | 1136 bp distal | ||||||
Rr541133 | regulatory region 541133 | 1203 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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