rs37125877 SNP Detail

Summary

• ID
  rs37125877
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108424260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAGTG CAATCCCTTC
  TTTGTAGAAA GTGTTGACAC ACATCTACTC CCTTTGGATG GAGTGTGAAA ACTCAGTCTT
  GTCTTGAGGA TCAGGCCACT GGGGACCTCA GCTCTCCAGA AATCCTGGAT TTAATTGGCC
  ATACTGTCAA AAGATTTTGT CAGAAGGAAA CCAGAACCAA TGCCACAGGA ACACTTGCTC
  R
  GCCCTCTTGT CCTGAAACCC CCATCACTGA CCTCTCAGCA CCTGGATCCC TGAAAACTGC
  CAGAAGTCAA GGTTCAACTG TCCTAGTGTA GTGTAATAGA CTTGGAGGAA CCCTGTCCCT
  AAGGCTTTCA GAACTTTCTT TCTCTTCCAA GGCTTCTCTC ATGGTGGTAA CTCTCCTGCC
  TGGGGCCTTC AAAGCAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51814109	NES14768924	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	G	G	G		G	G	A	G		A
ss133502589	ENSMUSSNP3493070	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss321892714	CHEV_6_108397293	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37125877					SNP	G	A	A	A	G	A	A	G	G	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814109	NES14768924	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108424260 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636107	regulatory region 636107	1909 bp distal
Rr636108	regulatory region 636108	227 bp distal
Rr636109	regulatory region 636109	within coordinates