rs3712240 SNP Detail

Summary

• ID
  rs3712240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76237020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTCTTCA ATAAAAAGAC AAATATTTAA ATGTATTTAA
  TAGATTTGTT ATCTATTCAT AAACACAAAC ACACAGAGGG GGTACTTTGG ATTATTATAT
  Y
  TGCTGTAAAT TAATATATTA TGTATGACTT TATTACACTG AGCATATAAG CACTTGCATA
  TTTTAGTGGC AGACTAAATA ATAGTAGCTA TTATAAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss5088490	WI_WGS_4_73594342	WI	MOUSE	f	SNP	T		C
ss146585093	ENSMUSSNP2978072	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs3712240					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76237020 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			578 bp distal
Rr594083	regulatory region 594083			737 bp distal
Rr594084	regulatory region 594084			1125 bp proximal