rs37121999 SNP Detail

Summary

• ID
  rs37121999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:80832934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATAAAT TCTATGTAGC
  ATCTCCTATG GACATTGATC TATGTGGTGT CAGAACTTGG ATGTGACCTT TGCTTAGGTC
  TGTCTAAAGC TAGAAGTCAT AATGTTTCTG TCTCCACGAA TTTCATTTCT GTTTCTGTAA
  TACAATACCC TGAGAATATC AGCTTAATGA AAAACAGATT TATTTGGCTT GCAACTCTAG
  Y
  TTACAATCAA TTATTGTGTG GAACTCAAGG TGGGAACTTA AATCATTAAA TCACAGTCAA
  GACCAGGGAG ATAATAAATG CATAGTTTTC TCTATTATTA CATATTCCCC AAATCAGGGA
  ATGCTGTTTC CTATGGTGGG ATGAGTATTT GATTATCAAT TGAAATTTAA GAAAATCACT
  GCATATATGC CCAGGAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51717796	NES14803542	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37121999					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51717796	NES14803542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:80832934 () rs orientation: forward

Symbol	Name	Function Class
Gm66997	predicted gene, 66997	1694 bp downstream
Rr632540	regulatory region 632540	960 bp proximal