rs37121166 SNP Detail

Summary

• ID
  rs37121166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATGAAGC GCCTGGAGGT
  AAGCCTGGCC CTGGCCCCAG TTTATCTCTG ACTAAGAAAG ACAGAAGACA CTAGCTGCCT
  GTGTAGAGTC TACTAAATCT ATTATCCATT CAGAATAGAA GTGTCTCACC CTAGAGAAGA
  CTTAAGTCCG GAAATGCGAA GGAAATTCTT GAAGGGTGAA TAGATATTTG AAAAGAACTC
  R
  CTCTGTCCCG TTTGCCCTCC ACTGGCTGAG ACCTTGGCTT CAGCTTGGAG GAGGCCCTTC
  AGCCAGAGTT TACAGGATTA GAGCCATTCT CCTTCCCCAT TCAAATTCTA AAATGGATCC
  AAATAGTTTG GATCCTCCAC ACTTCCTTGT CCCTCCACAG CTTCCTTTGA GGACCAGCCT
  GAGTAGCTAA AGACAAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990084	NES13925795	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37121166					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990084	NES13925795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937820 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1185 bp upstream
Tssr29661	transcription start site region 29661	1965 bp downstream
Tssr29662	transcription start site region 29662	1916 bp downstream
Tssr29663	transcription start site region 29663	1899 bp downstream
Tssr29664	transcription start site region 29664	1416 bp downstream
Tssr29665	transcription start site region 29665	1377 bp downstream
Tssr29666	transcription start site region 29666	1341 bp downstream
Tssr29667	transcription start site region 29667	1298 bp downstream
Tssr29668	transcription start site region 29668	304 bp downstream
Tssr29669	transcription start site region 29669	254 bp downstream
Tssr29670	transcription start site region 29670	217 bp downstream
Tssr29671	transcription start site region 29671	317 bp upstream
Tssr29672	transcription start site region 29672	420 bp upstream
Tssr29673	transcription start site region 29673	448 bp upstream
Tssr29674	transcription start site region 29674	497 bp upstream
Tssr29675	transcription start site region 29675	507 bp upstream
Tssr29676	transcription start site region 29676	517 bp upstream
Tssr29677	transcription start site region 29677	534 bp upstream
Tssr29678	transcription start site region 29678	613 bp upstream
Tssr29679	transcription start site region 29679	657 bp upstream
Tssr29680	transcription start site region 29680	680 bp upstream
Tssr29681	transcription start site region 29681	782 bp upstream
Tssr29682	transcription start site region 29682	805 bp upstream
Tssr29683	transcription start site region 29683	848 bp upstream
Tssr29684	transcription start site region 29684	873 bp upstream
Tssr29685	transcription start site region 29685	914 bp upstream
Tssr29686	transcription start site region 29686	980 bp upstream
Tssr29687	transcription start site region 29687	1078 bp upstream
Tssr29688	transcription start site region 29688	1102 bp upstream
Tssr29689	transcription start site region 29689	1128 bp upstream
Tssr29690	transcription start site region 29690	1158 bp upstream
Tssr29691	transcription start site region 29691	1204 bp upstream
Tssr29692	transcription start site region 29692	1220 bp upstream
Tssr29693	transcription start site region 29693	1251 bp upstream
Tssr29694	transcription start site region 29694	1284 bp upstream
Tssr29695	transcription start site region 29695	1310 bp upstream
Tssr29696	transcription start site region 29696	1323 bp upstream
Tssr29697	transcription start site region 29697	1347 bp upstream
Tssr29698	transcription start site region 29698	1484 bp upstream
Tssr29699	transcription start site region 29699	1566 bp upstream
Tssr29700	transcription start site region 29700	1579 bp upstream
Tssr29701	transcription start site region 29701	1611 bp upstream
Tssr33800	transcription start site region 33800	589 bp downstream
Tssr33801	transcription start site region 33801	934 bp downstream
Tssr33802	transcription start site region 33802	1070 bp downstream