rs3712100 SNP Detail

Summary

• ID
  rs3712100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96980470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG AAGAGAAGAT GAAGAGAAGT
  Y
  CCCTCTGGGA CTGTCCACAC TCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5088350	WI_WGS_7_87073605	WI	MOUSE	f	SNP		T	C
ss145438038	ENSMUSSNP3322426	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322339974	CHEV_7_104479773	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3712100					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96980470 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd21	potassium channel tetramerisation domain containing 21			1064 bp upstream
Rr400445	regulatory region 400445			828 bp upstream
Rr651401	regulatory region 651401			1723 bp distal
Rr651402	regulatory region 651402			within coordinates
Rr651403	regulatory region 651403			747 bp proximal
Rr651404	regulatory region 651404			1049 bp proximal
Rr651405	regulatory region 651405			1075 bp proximal
Tssr67964	transcription start site region 67964			1048 bp upstream
Tssr67965	transcription start site region 67965			1375 bp upstream
Tssr73573	transcription start site region 73573			754 bp downstream
Tssr73574	transcription start site region 73574			840 bp downstream
Tssr73575	transcription start site region 73575			853 bp downstream
Usp35	ubiquitin specific peptidase 35			Intron
				Noncoding-Transcript-Variant