rs3711965 SNP Detail

Summary

• ID
  rs3711965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49861497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT CAGTCGGAGT CAGTGAGCCT
  Y
  GTCTTACTGC AACCTGATAT GCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5088215	WI_WGS_3_50144607	WI	MOUSE	f	SNP			T	C
ss45393792	mCV24919826	ABI	CRAMUS_MOUSE	f	SNP	C	T		C	C
ss135146485	ENSMUSSNP975574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320753399	CHEV_3_49710970	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3711965					SNP	C	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49861497 () rs orientation: forward

Symbol	Name	Function Class
Rr576122	regulatory region 576122	1345 bp proximal