rs37116158 SNP Detail

Summary

• ID
  rs37116158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86769396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAGACCT CCAGCCCCTA
  CCTACTACTC TTGTGTTGGT TTTGGTTTTT TGTTGGCTGG GTCTTTCTTT TTTTGAAGGC
  CAGATCTCGA ATAGTCCAGA CTACCCTCCA ATATTACCCT GAACTACCGA TTGTCCTGAA
  GTATGAGATT CTATTCCTTT TAAATCTAAA ACGGGAAGCT TCCAAAAGGG TGTTGCTTGG
  K
  TTGGGACTGT CATTTTCTCC AAACTGTCCT CAAAGGCAAA CGTACACCTG ATTTATTTGG
  AGCCAAGGAT AAAACCCAAG GCTTCTGGTG TGCTGGGGGC ACGCTATCAA CTGAATATAT
  GCCTGGTCCT CTCTTCTTGT TCTTCTCTCC TCCGTTCTCT AGGGACTCAC GGCCATAAAT
  GGAGTTGCTT CCCACCTAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51749461	NES14799932	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37116158					SNP	G	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749461	NES14799932	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86769396 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	518 bp proximal
Rr633514	regulatory region 633514	1572 bp distal
Rr633515	regulatory region 633515	316 bp proximal
Rr633516	regulatory region 633516	1160 bp proximal
Tssr57508	transcription start site region 57508	1680 bp downstream
Tssr61864	transcription start site region 61864	1108 bp downstream
Tssr61865	transcription start site region 61865	1176 bp downstream