TTCAGAGGGT CAGTTCATTA TCATCAAGGC AGGAGCATGG CAGCATCCAG GCAGGCATGG TGCAGGAGGA GCTGAGAGTT CTACATCTTC ATCTGAAGGC TGCTAACAGA ATATTGACTT CCAGGCAGCT AGAATGAGGG TCTTATAGAC CACACCCATA GTGACACACC TATTCCAACA GGGCCACACC TTTTAACAGC R CCACTCCCTG GGCCGAGCAT ATACAAACCA TCCCAGAATT GCTGTTTCAT AGCAAACAAT CCCTTTGATA GCACCAGGCA ATGCAGAAGG AGTGGCGCCC AGGGCCCCAC CAGAGAAGGT TCTTGGTAAG TGGCTTGTGA CTGCAGGTAC CTCAGAGGTG GCAGTACTGA CACAGGAGCT GCCAAGATCA CGCTGACCAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
C57BL/6J |
---|---|---|---|---|---|---|---|
ss5087675 | WI_WGS_4_133540726 | WI | MOUSE | f | SNP | G | A |
SNP Consensus Information | |||||||
SNP | Consensus Type | 129S1/SvImJ |
C57BL/6J |
||||
rs3711428 | SNP | G | A |
Location: Chr4:135680619 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Hmgcl | 3-hydroxy-3-methylglutaryl-Coenzyme A lyase | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Noncoding-Transcript-Variant | ||||||||
Rr398602 | regulatory region 398602 | 995 bp upstream | ||||||
Rr602216 | regulatory region 602216 | 1606 bp distal | ||||||
Rr602217 | regulatory region 602217 | within coordinates | ||||||
Rr602218 | regulatory region 602218 | 1030 bp proximal | ||||||
Rr602219 | regulatory region 602219 | 1131 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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