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rs3711428 SNP Detail
Summary
  • ID
    rs3711428
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135680619 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCAGAGGGT CAGTTCATTA
    TCATCAAGGC AGGAGCATGG CAGCATCCAG GCAGGCATGG TGCAGGAGGA GCTGAGAGTT
    CTACATCTTC ATCTGAAGGC TGCTAACAGA ATATTGACTT CCAGGCAGCT AGAATGAGGG
    TCTTATAGAC CACACCCATA GTGACACACC TATTCCAACA GGGCCACACC TTTTAACAGC
    R
    CCACTCCCTG GGCCGAGCAT ATACAAACCA TCCCAGAATT GCTGTTTCAT AGCAAACAAT
    CCCTTTGATA GCACCAGGCA ATGCAGAAGG AGTGGCGCCC AGGGCCCCAC CAGAGAAGGT
    TCTTGGTAAG TGGCTTGTGA CTGCAGGTAC CTCAGAGGTG GCAGTACTGA CACAGGAGCT
    GCCAAGATCA CGCTGACCAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
C57BL/6J
ss5087675 WI_WGS_4_133540726 WI MOUSE f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
C57BL/6J
rs3711428 SNP G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135680619 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmgcl 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Intron
mRNA-UTR
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant
Rr398602 regulatory region 398602 995 bp upstream
Rr602216 regulatory region 602216 1606 bp distal
Rr602217 regulatory region 602217 within coordinates
Rr602218 regulatory region 602218 1030 bp proximal
Rr602219 regulatory region 602219 1131 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory