rs37113233 SNP Detail

Summary

• ID
  rs37113233
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5346780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAAAAAAC CTCAGGACCT TTCTTGGGGC AAGACACCAT
  GACCCTTGCC TGCCCAACAT CCACCAATTT ATTTTATCTC CTTCCCTCTC CTAGTTCTGC
  M
  GCTCTCAATG ACAGCCTGTT TGGTTTGTGT GTGATGAATA AAGGAGAGGA ACACAAATGG
  TCTCATTTCC CACCCACGCG CTTCAGATCT TTTCCTAGCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50579698	NES13649683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37113233					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50579698	NES13649683	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5346780 () rs orientation: forward

Symbol	Name	Function Class
Gal3st3	galactose-3-O-sulfotransferase 3	1579 bp upstream
Gm50203	predicted gene, 50203	717 bp downstream
Rr370429	regulatory region 370429	451 bp downstream
Rr542978	regulatory region 542978	1505 bp distal
Rr542979	regulatory region 542979	1335 bp distal
Rr542980	regulatory region 542980	1136 bp distal
Rr542981	regulatory region 542981	1137 bp distal
Rr542982	regulatory region 542982	593 bp distal
Rr542983	regulatory region 542983	1089 bp proximal
Rr542984	regulatory region 542984	1590 bp proximal
Sf3b2	splicing factor 3b, subunit 2	1297 bp upstream
Tssr154395	transcription start site region 154395	1524 bp upstream
Tssr154396	transcription start site region 154396	1550 bp upstream
Tssr154397	transcription start site region 154397	1612 bp upstream
Tssr157567	transcription start site region 157567	1322 bp upstream