rs3709593 SNP Detail

Summary

• ID
  rs3709593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118743373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACG AGAGTCAGAA TGTCTTGGCT
  Y
  TTCTGCTTCT GGGGGGGTGG TGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5085839	WI_WGS_2_119860385	WI	MOUSE	f	SNP		C	T
ss147317051	ENSMUSSNP4310512	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320472607	CHEV_2_118738628	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3709593					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118743373 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Rr563376	regulatory region 563376	1481 bp distal
Rr563377	regulatory region 563377	690 bp proximal
Rr563378	regulatory region 563378	1812 bp proximal