rs3709565 SNP Detail

Summary

• ID
  rs3709565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50578794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACGAGTT CAGAACACCA
  GCAAATCGAG GACAGGAAGT GGGCCATGGA GCCAGCTGAG AGGCACAGCC TCATGACTGG
  ATGCCTGAGA GCTCCAGGCT TCCCTGTGCC TCCCTCAGTC CTCACTCACC TCACAAGATG
  AGGACTTGCT CTTGGCCTTG CAGAGTAGAG CGTTGATCAC CTTGACCACT AGGTGGCGCC
  R
  TGCTGAGAGG TCAGGACTAG TTCAGTGATG TGGTCAGATG GCTTGTTACC CTGCAAGTTG
  GGTGTGGTGT CAGAGAAGGA AGAATGGGTG TGCATAATCA TGACTGACAG CTTCTCAGCG
  CCATGCTCTA ACTACAGCTT TGGGCAAGTG GGTCCATCAT GCTGAGGTTT TGCTTCCTTA
  TCTGATAGTG ATGATAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5085811	WI_WGS_6_50979242	WI	MOUSE	f	SNP	G							A
ss47873670	NES11694543	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	A	G	A	G	G
ss133182426	ENSMUSSNP3635179	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3709565					SNP	G	G	A	A	A	G	A	A	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873670	NES11694543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50578794 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Gm44054	predicted gene, 44054	1574 bp downstream
Rr630049	regulatory region 630049	within coordinates
Rr630050	regulatory region 630050	within coordinates