rs37094953 SNP Detail

Summary

• ID
  rs37094953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108823576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTCATTT TTCATCTGTG
  GCTAAATACT ACTTGCATGC AGACATGCGC ATACACCTGA CTGCTATAGA GTGATCTTTT
  CATTATCCAA GGATCAAAGA AAGTCAAAGA AAGTTAGGCT TAAGTACCCA TTTCTCATCT
  CTGGCAGGGA TGGGGAAGCT GCGAAGCAGC GGCACAGGAG TAGGAGGGCC GTGCCCTAAT
  Y
  CTTCTGCCGC GGTTGAGACC TAAGTGCCTT GTTTGTTTGT TTGTTTGTTT CTACAGGCAA
  TGTTGTGAAC ATCCAGACAG GCCATTGGGT TGGAAAGCAG AGTGGCTTGG GTGCTGGGCT
  GGATTCCTTC TATGAGTACC TCTTGAAATC TTACATTCTT TTTGGAGAAA AAGAAGATCT
  AGAGATGTTT AATGCTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51808829	NES14771069	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37094953					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808829	NES14771069	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108823576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr636224	regulatory region 636224			974 bp proximal
Tssr58121	transcription start site region 58121			1945 bp downstream