rs37092599 SNP Detail

Summary

• ID
  rs37092599
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108040710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCATGCC TTACAGGGAT AGAGTAACTA TGAAAGGACC
  ATTCTTCTTT TGTTTATTGC TTCTGCTTTT CCATCTCTTC TCTTCCTATA CAACCAATGC
  Y
  ACGCTCAGAA AATCAGAATG CTTATTCTAC CTTACAGGGT GAAATGTTGT CCTTTTTCTA
  GAATTGAAAA TAAAGCCAAT TAAGACATTT AGATGCAGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51822023	NES14764760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37092599					SNP	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51822023	NES14764760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108040710 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	1144 bp upstream
Rr399805	regulatory region 399805	1450 bp upstream
Rr399806	regulatory region 399806	1970 bp upstream
Rr636028	regulatory region 636028	475 bp proximal
Rr636029	regulatory region 636029	1223 bp proximal
Rr636030	regulatory region 636030	1549 bp proximal
Setmar	SET domain without mariner transposase fusion	1296 bp upstream
Tssr58052	transcription start site region 58052	1286 bp upstream