rs3709220 SNP Detail

Summary

• ID
  rs3709220
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148378396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TGTGGCTCCG ATGGGCTGCC
  M
  CCCTGTGCCA GCTTCTATTC CTGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5085465	WI_WGS_4_143659253	WI	MOUSE	f	SNP			C	A
ss148000488	ENSMUSSNP6481359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			C
ss321418927	CHEV_4_147668048	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3709220					SNP	C	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148378396 () rs orientation: forward

Symbol	Name	Function Class
Rr604647	regulatory region 604647	1471 bp distal
Rr604648	regulatory region 604648	201 bp distal