rs37089736 SNP Detail

Summary

• ID
  rs37089736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18436487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTTCA GGAAGCCATG
  GAACCTAACT TGGAGGAAAA AAAAAAAAAA CTTTCCCAAC CGATCAACAG AGGGTGAGCT
  TATAAGGCCT TTGTCTCCAC ACATAAAAGG AAGAGCACTG AACCCAGGGC TGTATGAATG
  ATAAAAGTCC CCTATCGCTG AGCAGCATCC CAAACCTGAG GTAAGATTCT GTCACATTCA
  Y
  CAAAGCACCC AGCAGCAGAA AAGTTGTGCC TCCTCTTTCT CCTTCTGGTT TCTGTCCCCT
  TGTCACTTTT ACGGTGAGGC CTACTGTGCT GCTATCTTTA TGTCAACTTG ACACAAGCCA
  GAGTCATTTG GGAAGAGGGA ACCAGAACTG AGAAAGTATC CCCACCAGAC TGGCCTATGG
  CCTGTGGGGC ATTTTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	WSB/EiJ
ss51250473	NES13802232	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	WSB/EiJ
rs37089736					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250473	NES13802232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18436487 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			151 bp downstream
Rr626922	regulatory region 626922			1441 bp distal
Rr626923	regulatory region 626923			1725 bp distal
Rr626924	regulatory region 626924			21 bp proximal