rs37087799 SNP Detail

Summary

• ID
  rs37087799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCCTTC CCGTGGCTCA
  CCTCACTGAG TTAACCCACC GTGCGGTTTG CCCTAATCAC AGCGCGCTGC CTCTTCCACC
  GTGAGGGCCT TCCTTATCCA TCTCTTTAGA GGCGGATACA GATACACAAC ACACATAAAA
  CACCTGGCAG CCAGAGCTCA CCGTGAGTGC CAATCTCTGT CTCCTTAAAA TAGCAGAAGG
  W
  CTTTTGGGAG GAGGTCTAGG GCTTACTTAA ACGGGGGTAA CATTTGAGAC CCAAAGCTCA
  CAAAAGGAAG GTCCTGCTTT GCCCAGAGTC TCCAGTTTAG TTGGCAGCCT GGCAGCCGGT
  CTTCCCCATT TTCTGGGTCC CTCACCTGCT CCTCTTCCCT CCCTTCCCTC CCCTTTCCTT
  TCCCTAGAAA GCATTGACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50810544	NES14204863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	A	A		T	A	A	T		A
ss146766642	ENSMUSSNP3819002	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
ss323245279	CHEV_10_8483030	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37087799					SNP	T	T	T	T	A	T	A	A	A	T	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810544	NES14204863	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638996 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	213 bp downstream
Rr427375	regulatory region 427375	1782 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	272 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	836 bp upstream
Tssr96640	transcription start site region 96640	973 bp upstream
Tssr96641	transcription start site region 96641	949 bp upstream
Tssr96642	transcription start site region 96642	918 bp upstream
Tssr96643	transcription start site region 96643	862 bp upstream
Tssr96644	transcription start site region 96644	766 bp upstream
Tssr96645	transcription start site region 96645	616 bp upstream