rs37083502 SNP Detail

Summary

• ID
  rs37083502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125229754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGACAG GGCTGGGGGA
  GCGGGGAGTG GTTACACATT CCTCCCCTCC TGACTATTGG GGCTCAAAAC AAAGAGAGGA
  GTCCCAGCCA GCTAGCCCCG TGGAAGACTG TACCTTTGCA GAGGTGTGTG TGCCCTCTGC
  CTAGATAGCC CTCCCCCCAC ACACACACAC CAACCTTCTC TGACCTCAAT CCAACGCCAT
  Y
  TTCTTTATTT TCCGTGTATG TGTATTTGCC TGCATGTCTG TGTGCATACC GCATGTGTGA
  CTGGTGTGTG TGGAAGCCCG AAGAGGGAGT CAGGTGACCC TGGAACTAGA GCTAGCAATG
  GTGTTGAGCT GCCCTGAGGG TCTAGGAAAC AAAGTTGGCC AGGTCCTCCG GAAGAGCACC
  CAGTGTTCTT AACCACTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51197987	NES13817972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37083502					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51197987	NES13817972	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125229754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620651	regulatory region 620651			1504 bp proximal