rs3708025 SNP Detail

Summary

• ID
  rs3708025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146080001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCACAGAG AAGTAGTTCA TGGCCCTTCT TCATTTACAT
  TTGTGTTGGC TCAACACCAC AGCTCTCAAC GGAAATAATA TTCTGAAGCC ATTTTGAGTG
  R
  CCATGGCCAG GGAACACAGA TACAGGCTGC TTCATATTCC ATGTTCTAAC ATAGATTCAG
  GTTCACGAAG TTTCATAGTT TTCCAGGACA AAGAAAGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5084269	WI_WGS_3_146907605	WI	MOUSE	f	SNP	G		A
ss136043562	ENSMUSSNP296538	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321010072	CHEV_3_146037210	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3708025					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146080001 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	894 bp proximal
Rr587015	regulatory region 587015	1706 bp proximal
Rr587016	regulatory region 587016	1768 bp proximal