rs37080117 SNP Detail

Summary

• ID
  rs37080117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65393513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTGTCAT TGATACATAG CTCTTTGTTC TGTGCAGATT
  TTGACCTAAC AGAACACCTG CGTCTTGCTT TTTGACCAGC ATGGAACTAC AATTTTTCTT
  Y
  TTTCACCTCA GATCATTGCT GATTCTTCCA TGCATATCCC CAGTATGTTG CTCTTGAGCC
  CTCTGTCTGT CTCCCTTCGT CTTTCCCCTA TTTTCACTTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50966898	NES13932902	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37080117					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966898	NES13932902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65393513 () rs orientation: forward

Symbol	Name	Function Class
Rr375119	regulatory region 375119	1399 bp downstream
Rr577685	regulatory region 577685	1751 bp distal
Rr577686	regulatory region 577686	1597 bp distal
Rr577687	regulatory region 577687	1377 bp distal