rs3707925 SNP Detail

Summary

• ID
  rs3707925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87074858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT GCATTTTCTC CACAGCCTCC
  R
  GTTAGGATAT ACTCCTCATA TTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5084169	WI_WGS_3_87953169	WI	MOUSE	f	SNP			A	G
ss45452574	mCV24904747	ABI	CRAMUS_MOUSE	f	SNP	A	A		G	A
ss135454980	ENSMUSSNP1468260	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			A
ss320831219	CHEV_3_86971473	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3707925					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87074858 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr2003	regulatory region 2003	1362 bp distal
Rr579452	regulatory region 579452	1606 bp distal
Rr579453	regulatory region 579453	1935 bp proximal