rs37078544 SNP Detail

Summary

• ID
  rs37078544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123029904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCCGAGC CTCCCCACCG CCCTCCCAGC ACCTGTACCG
  CCCTCTCTTG CGTCACGCTC TTTGCTCGGC CCACTTTTCA GCTAAAAGGA CAGAGCCTCG
  Y
  ACTAAAAGAA AAATCCCTGT TTGGGACAGA ATGGGGCCAA TGGAGAGCGG GGAGGACAAC
  ATTGCTCTTG CTTTAGCAGA TTCCGTGCCA GCACCTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51024624	NES13910045	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	T	C	C		C	C		C
ss135760899	ENSMUSSNP3134931	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss320918240	CHEV_3_122939173	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37078544					SNP	C	T	C	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024624	NES13910045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123029904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	within coordinates
Rr584473	regulatory region 584473	1384 bp distal
Rr584474	regulatory region 584474	1556 bp distal
Rr584475	regulatory region 584475	within coordinates
Rr584476	regulatory region 584476	665 bp proximal
Synpo2	synaptopodin 2	106 bp upstream
Tssr35497	transcription start site region 35497	133 bp upstream
Tssr35498	transcription start site region 35498	98 bp upstream