rs37073886 SNP Detail

Summary

• ID
  rs37073886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151897416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAGAGG AAGAAAAAGA
  AAAAGAAAAA GAAAAAGAAA AAGAAAAAGA AAAAGAAAAA GAAAAAGAAA AAGAAAAAGA
  AAAAGAAAAA GAAAAGAAAG ATAATTTGGG GAGTGAGTTA CTCTAAAAAG CACTGCCAAG
  AGAAAACGTA AAGAATTAAG AGTACCAGCT GGTATACTTG AAAACTCTGA AGTCAAACAC
  R
  ATTAATGAGC CTGAATCCTA CGGCTTAACA CAGAGGTGCA CTTGAGCACT CCATAAGATG
  GAGCCAAATA ACCTGCGTTT ACACAAGTGG CTTTGTGGGA ACTCACACAC CACTCCACCT
  ACTCAAGAGT GGCCAGAGTA CTGGCACTGT CTCAAGAGCC TGCTCGCTCC TGAGAGGTCA
  CACCACGGCA TTCTCAACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060590	NES13427717	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37073886					SNP	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060590	NES13427717	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151897416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			1922 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			550 bp upstream
Rr587481	regulatory region 587481			238 bp distal
Rr587482	regulatory region 587482			47 bp proximal
Rr587483	regulatory region 587483			60 bp proximal
Tssr36163	transcription start site region 36163			1944 bp downstream
Tssr36164	transcription start site region 36164			1968 bp downstream
Tssr36165	transcription start site region 36165			1994 bp downstream