rs3707004 SNP Detail

Summary

• ID
  rs3707004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146079888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGTTGGAA AATTTAGAAA TAAATTGATT TGTTGCAGTT
  AACCATTGGA TGGACCTGTC TCCATCAGGA GGTCAGTGCT TACTGGTGTG GCTGTGTCAC
  Y
  GCTCCCCATC ACTTCCACAG AGAAGTAGTT CATGGCCCTT CTTCATTTAC ATTTGTGTTG
  GCTCAACACC ACAGCTCTCA ACGGAAATAA TATTCTGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5083245	WI_WGS_3_146907492	WI	MOUSE	f	SNP	C						T
ss45434662	mCV23542184	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		C
ss47026894	NES10844407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T	T		C	T	C	C		C
ss136043559	ENSMUSSNP4063962	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss321010071	CHEV_3_146037097	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3707004					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026894	NES10844407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146079888 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	within coordinates
Rr587014	regulatory region 587014	1007 bp proximal
Rr587015	regulatory region 587015	1819 bp proximal
Rr587016	regulatory region 587016	1881 bp proximal