rs3706853 SNP Detail

Summary

• ID
  rs3706853
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137253570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAC TCCTTTGAAG TGTGTCCAAA
  W
  GAGACTGTAA GTCACGAACA CAAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5083093	WI_WGS_3_138046122	WI	MOUSE	f	SNP						A	T
ss45463944	mCV23945055	ABI	CRAMUS_MOUSE	f	SNP		A	A				T
ss61085538	NES16600953	PERLEGEN	MM_PANEL2	f	SNP	A			A	A			A	A	A		A	A		T
ss135941307	ENSMUSSNP1437163	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320975860	CHEV_3_137210773	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3706853					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085538	NES16600953	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137253570 () rs orientation: forward

Symbol	Name	Function Class
D3Mit349	DNA Segment, Chr 3 Massachusetts Institute of Technology 349	1085 bp distal
Rr585946	regulatory region 585946	within coordinates