rs3706819 SNP Detail

Summary

• ID
  rs3706819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154909354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTT TTCTGAGTAC AGGCACTATA
  M
  ACAGAGCTGA GTAGCTGGTT CTGTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5083059	WI_WGS_4_150274260	WI	MOUSE	f	SNP	A						C
ss46772533	NES10999482	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	A	A		C	A	C	A		A
ss148106713	ENSMUSSNP2869773	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321440013	CHEV_4_154199006	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3706819					SNP	A	A	A	A	A	A	C	A	A	A	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772533	NES10999482	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154909354 () rs orientation: forward

Symbol	Name	Function Class
Rr606270	regulatory region 606270	750 bp proximal
Rr606271	regulatory region 606271	1053 bp proximal
Rr606272	regulatory region 606272	1150 bp proximal