rs37066500 SNP Detail

Summary

• ID
  rs37066500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125231721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGCAAAC ATAATGGAAT
  CTGTACACAG CCAAGTAGGT GTCTGCTGTG TGACCTGCAC CCACAGGCTC ATGCTCAGAG
  AGGCTCATAA TCCTCCTGCC TCAGCCTCCC CAAAGGCTAA AACCACAACC CTACAACCTC
  CACTCAACAT TCATTCGTTC TTTACTGTAT GGCAAAACGA TGTGCTGGAG ACAAAGCGCA
  R
  TGGACAGAGT ACCTCCTGAC CTTGCTCGGT CCTCCCTGAG AAACAAGCTG GACCCCAAAA
  CCATCTCCAA GACACTTCCC AATGCACCAA CATCTCAGCC CCAAACCATG TTAGAACCCC
  AAAGATAACA GACCAAGGAA GAAGGTGGAG GTGTAACATG CTTAGGCACA GCAGCCCAGG
  GGCCCAGCTG TGCAATTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51197982	NES13817947	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37066500					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51197982	NES13817947	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125231721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620651	regulatory region 620651			147 bp distal
Rr620652	regulatory region 620652			145 bp proximal
Rr620653	regulatory region 620653			795 bp proximal