rs3706383 SNP Detail

Summary

• ID
  rs3706383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149220171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC TCCAGCAGGC TAAAACGGCT
  Y
  AGCCACACTC CCTAAGGAGG GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5082622	WI_WGS_4_144520632	WI	MOUSE	f	SNP	C						T
ss32476197	NES05012503	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T	C		T	C	C	C		C
ss46700385	NES10945206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T	C		T	C	C	C		C
ss321424997	CHEV_4_148509823	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3706383					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss32476197	NES05012503	PERLEGEN	MM_PANEL	f	SNP	C/T
ss46700385	NES10945206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149220171 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Cpgi15320	CpG island 15320	1261 bp proximal
Rr398863	regulatory region 398863	1791 bp upstream
Rr604839	regulatory region 604839	535 bp proximal
Rr604840	regulatory region 604840	1845 bp proximal
Rr604841	regulatory region 604841	1899 bp proximal
Tssr44623	transcription start site region 44623	1822 bp downstream
Tssr44624	transcription start site region 44624	1885 bp downstream