rs3705887 SNP Detail

Summary

• ID
  rs3705887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149220123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AAATCTGCGC TCAGTGGCCC
  R
  TGCCAGGCTT CATCTGAACT CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5082124	WI_WGS_4_144520584	WI	MOUSE	f	SNP	A	G
ss321424996	CHEV_4_148509775	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3705887					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149220123 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Cpgi15320	CpG island 15320	1309 bp proximal
Rr398863	regulatory region 398863	1839 bp upstream
Rr604839	regulatory region 604839	583 bp proximal
Rr604840	regulatory region 604840	1893 bp proximal
Rr604841	regulatory region 604841	1947 bp proximal
Tssr44623	transcription start site region 44623	1870 bp downstream
Tssr44624	transcription start site region 44624	1933 bp downstream