rs37053525 SNP Detail

Summary

• ID
  rs37053525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99064849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACACTG CACCAAGCTC
  ACTGATTAGC ACCAAGACGG TGGTGACCAG GAGTCCTGGC ACACGCATGT GAGGTCTTTG
  GGAGCCAAAA ACACAGGAGT GGCCTTGGTT CCTTCTGTGT TCAGGGCAGG GACAGCTGCC
  TCGTGGTGCC ACACTCTGAA CGCCTCAGCC CTTCTGTTCC CCACAGAAAA GGATCTGCTC
  Y
  TCTTTTGTAC CCAATCTTTT CATTCCCAGG ATGCTCAAGA GTGATGGTCG CATCGCCAGG
  CCTACCCACC CTTCCTGTTC TCTGTCCCAG GTCACCAGAC ACCCATCTCC ACTCTACCTG
  CCCTTGTTTG CAAGCCAGTT CCGCATGGCA GAGTTCGATG ACATCCTCAT ACCCAGGAGG
  CCAATACTGC TTTGATCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51783685	NES14788796	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs37053525					SNP	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51783685	NES14788796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99064849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr635345	regulatory region 635345			42 bp distal
Tssr62271	transcription start site region 62271			344 bp upstream