rs37053280 SNP Detail

Summary

• ID
  rs37053280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151896988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTCAG GAACACAAGC
  ACGGACAATG CGAAGGAGAG AAAGGAGAAA AGCTTCCTCA CACAGAACCT CCAGGCCATG
  AGGGTGGGGT GCTGCGGATT GAGAGCGGGG CTCTGCATGC TTAGCTAGTG CTGTGGCCCT
  GAGCTACAAC TCCTCCTAAG CCGACAGAGC TTTGCAGTCA CTGTGTGCTA GGTTACCAAA
  K
  AGTAAGAAAC AGAAGAGCTC AACAGTCTTC ACTCTCCTAT ATTTTCAGGT AGCTAATAAC
  TACAGAGTAT TTCTGAATAA TAAATTTCAA CACTTTAAGC AACCAGTCCT GCTTCATGCT
  TCGTTCCTTG CTTAGAGCAC TGATCTGGGC TAAGAACACC AAGAACAAAA AAAGACTCAG
  GGTATACAGA AATTGTGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51060596	NES13427766	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37053280					SNP	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060596	NES13427766	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151896988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm64624	predicted gene, 64624			978 bp upstream
Rr587480	regulatory region 587480			1643 bp distal
Rr587481	regulatory region 587481			within coordinates
Rr587482	regulatory region 587482			475 bp proximal
Rr587483	regulatory region 587483			488 bp proximal