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rs37053199 SNP Detail
Summary
  • ID
    rs37053199
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:41354305 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTTAT TTTATGTAAG AGCCTAGTAG
    R
    ATCATAACTG TGGGGAGGTG ACGGG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss50825213 NES13542356 PERLEGEN MM_PANEL2 f SNP G G G A G G G G G G A G
ss146402148 ENSMUSSNP3486179 ENSEMBL ENSEMBL_Sanger f SNP A G G
ss325809398 CHEV_19_41440356 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs37053199 SNP A G G G A G G G G G G G A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss50825213 NES13542356 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:41354305 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pik3ap1 phosphoinositide-3-kinase adaptor protein 1 Intron
Rr405959 regulatory region 405959 1595 bp upstream
Rr547615 regulatory region 547615 within coordinates
Rr547616 regulatory region 547616 511 bp proximal
Rr547617 regulatory region 547617 1277 bp proximal
Tssr159302 transcription start site region 159302 1931 bp upstream
Tssr159303 transcription start site region 159303 1909 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory