rs37053070 SNP Detail

Summary

• ID
  rs37053070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102183096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTTGGA AAACTGAGGT
  CAGGAGAGAT CGCAGTGAGT TTGAGGCCAG TCAGTTATTT GGGAGACTCT GTCTCAAAAA
  GAAAAGAAAA ATCCCCCCAA AATGGAAAAT AAGAGCAGAA GGCACATGAT AAGAGTTTGA
  CAGGTACTTG AATAAAAGAC TGAAGCAGTG TGCCCCATGA ACCGCCCACT TCACTAATAG
  Y
  TTACAGTCCT GTATGGAAGG TTCTGCAGTG GAGTTGGCTG ATGCCTGTTC CTGTCCTGGC
  TCCACTCCAG ATCACCTTAT CGGGATCTCT GGGGCTTTGA CTTGCTAGCA AACTCTTCAG
  GCAGTTTCTT AGGGTCACTG CTGACACCAG TGCCTGAGGA ATTCTTGACA AAAGTCCTTC
  AGCTTTGCCA CCAAGATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51586184	NES14666129	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	T	T	T		T	T	T	C		T
ss320855309	CHEV_3_102079703	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37053070					SNP	T	C	T	C	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586184	NES14666129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102183096 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	181 bp distal
Rr582220	regulatory region 582220	within coordinates
Rr582221	regulatory region 582221	209 bp proximal