rs37050596 SNP Detail

Summary

• ID
  rs37050596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79996308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCTGAGG ATGAATTGCT
  TTATCTGGGA ATGGCAAAAG CCCGCACAAT AAGGAATGCC AGGTACTCTG AGGATTTTCC
  TTTCCTTTTC TTTTTCTTTT TTTTTTTTTT TTCTTTTTTA ATCCCTTCTC CTCTCTCTCT
  CTCTCTCCCT GTCTCTCTCT CTCTCCCTCT TTTTTTTCCC ACAGAGAAGT TGGTTACCTC
  Y
  GAGATGAGCT GTAGCTCTTT TCACAGATTG CCAATTTACT GCTAATGTGC CCCTAGTGAA
  TTATACAATG GTCCTCAGAG CCTAGAGGCC CTCCCCCTCC GGCACCCCCC CCCCCCCGCG
  GCTTCCTTTT CCCTGCCCCT TCATCCCACC CCGTGCTGAT TTTTTTTTTA AGTATACGTA
  TATCTATATT ATTTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51705498	NES14809926	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37050596					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705498	NES14809926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79996308 () rs orientation: forward

Symbol	Name	Function Class
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632526	regulatory region 632526	267 bp distal
Rr632527	regulatory region 632527	406 bp distal
Rr632528	regulatory region 632528	within coordinates
Rr632529	regulatory region 632529	329 bp proximal
Tssr57230	transcription start site region 57230	380 bp downstream
Tssr57231	transcription start site region 57231	328 bp downstream
Tssr57232	transcription start site region 57232	295 bp downstream
Tssr57233	transcription start site region 57233	246 bp downstream