rs37049044 SNP Detail

Summary

• ID
  rs37049044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68488899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAATACA CGTGTACTAT
  TGTTTGTATA ATTTGTTCAT GTAATTAAAA TATAATTTTT CTCGTTTCAA TTCTGTACTG
  ATATAATGAA GGTAAAGAGG TATTATCAGA ATTTTATGTG TCTTGGTGTC TTCTAATTTC
  TAAATTTTTA TAGCTTTAGA CCTGCTTGTT ATCAGCTGTA AATTGATTAG TGACTTAAAA
  Y
  AGGGGCTCCA ATGAGTGACA AAAATTGTCC GTGATGCAGA ACAGACAAGG AGGGAGAAGT
  GAGCCCAGAT GCAGTAACTT TGCCTCTCCC CTGGAGAAGC CAGTTCTCTA GGCTCCACCC
  TGTAGGCTGT GTATAATTCT TCTGAAGGAG CTATCCTAAC ACCTCGGTGG AACTGCCCTC
  CAGAGAGGTA GCCTTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51542864	NES14685765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37049044					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542864	NES14685765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68488899 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	56 bp proximal
Rr578031	regulatory region 578031	196 bp proximal
Rr578032	regulatory region 578032	538 bp proximal
Schip1	schwannomin interacting protein 1	Intron