rs37042770 SNP Detail

Summary

• ID
  rs37042770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCGCAA CAGATTCAAG
  CTCTGCAGAG CAATGTCCGG GCTCAGTTGA TAGACATGAA GCGCCTGGAG GTAAGCCTGG
  CCCTGGCCCC AGTTTATCTC TGACTAAGAA AGACAGAAGA CACTAGCTGC CTGTGTAGAG
  TCTACTAAAT CTATTATCCA TTCAGAATAG AAGTGTCTCA CCCTAGAGAA GACTTAAGTC
  Y
  GGAAATGCGA AGGAAATTCT TGAAGGGTGA ATAGATATTT GAAAAGAACT CGCTCTGTCC
  CGTTTGCCCT CCACTGGCTG AGACCTTGGC TTCAGCTTGG AGGAGGCCCT TCAGCCAGAG
  TTTACAGGAT TAGAGCCATT CTCCTTCCCC ATTCAAATTC TAAAATGGAT CCAAATAGTT
  TGGATCCTCC ACACTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990088	NES13925793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37042770					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990088	NES13925793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937768 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Intron
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1237 bp upstream
Tssr29661	transcription start site region 29661	1913 bp downstream
Tssr29662	transcription start site region 29662	1864 bp downstream
Tssr29663	transcription start site region 29663	1847 bp downstream
Tssr29664	transcription start site region 29664	1364 bp downstream
Tssr29665	transcription start site region 29665	1325 bp downstream
Tssr29666	transcription start site region 29666	1289 bp downstream
Tssr29667	transcription start site region 29667	1246 bp downstream
Tssr29668	transcription start site region 29668	252 bp downstream
Tssr29669	transcription start site region 29669	202 bp downstream
Tssr29670	transcription start site region 29670	165 bp downstream
Tssr29671	transcription start site region 29671	369 bp upstream
Tssr29672	transcription start site region 29672	472 bp upstream
Tssr29673	transcription start site region 29673	500 bp upstream
Tssr29674	transcription start site region 29674	549 bp upstream
Tssr29675	transcription start site region 29675	559 bp upstream
Tssr29676	transcription start site region 29676	569 bp upstream
Tssr29677	transcription start site region 29677	586 bp upstream
Tssr29678	transcription start site region 29678	665 bp upstream
Tssr29679	transcription start site region 29679	709 bp upstream
Tssr29680	transcription start site region 29680	732 bp upstream
Tssr29681	transcription start site region 29681	834 bp upstream
Tssr29682	transcription start site region 29682	857 bp upstream
Tssr29683	transcription start site region 29683	900 bp upstream
Tssr29684	transcription start site region 29684	925 bp upstream
Tssr29685	transcription start site region 29685	966 bp upstream
Tssr29686	transcription start site region 29686	1032 bp upstream
Tssr29687	transcription start site region 29687	1130 bp upstream
Tssr29688	transcription start site region 29688	1154 bp upstream
Tssr29689	transcription start site region 29689	1180 bp upstream
Tssr29690	transcription start site region 29690	1210 bp upstream
Tssr29691	transcription start site region 29691	1256 bp upstream
Tssr29692	transcription start site region 29692	1272 bp upstream
Tssr29693	transcription start site region 29693	1303 bp upstream
Tssr29694	transcription start site region 29694	1336 bp upstream
Tssr29695	transcription start site region 29695	1362 bp upstream
Tssr29696	transcription start site region 29696	1375 bp upstream
Tssr29697	transcription start site region 29697	1399 bp upstream
Tssr29698	transcription start site region 29698	1536 bp upstream
Tssr29699	transcription start site region 29699	1618 bp upstream
Tssr29700	transcription start site region 29700	1631 bp upstream
Tssr29701	transcription start site region 29701	1663 bp upstream
Tssr33800	transcription start site region 33800	641 bp downstream
Tssr33801	transcription start site region 33801	986 bp downstream
Tssr33802	transcription start site region 33802	1122 bp downstream