rs37040841 SNP Detail

Summary

• ID
  rs37040841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143417577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCAGAGG TACTGCCTAT
  GTGGGTTTGG CAGGGTAGGT ATCATGCCAC TGGGAAAATG AACTTCGAGT GAATTTCTCA
  GATCTGCCTC GCTCAACTCT TGCAGTTGCC TCTCTGCTTT CACTGATTCT TCAAAATATC
  TTGTCAGCGT CCGTTCCTCT GTCCCTAGCC TCACTGTGAC AGACCCATTG TCCAGACCTC
  R
  TAGCAATTCA ATCACCTGCT TGGGTCCCCA GAGTCGCAAG AGAATTTATA GAGCTCTTTT
  TGCCACTTCT CCCTCTCTGC CTTAGGATGT AGCTGCCCTT TCTCCACTCA AATCTTACCT
  CTGAGTTGGT GTGAGTCACA GGAGAAGATT CTTTCTGGCC CTGTCTTTGC TTCAATGCAG
  GTGAATGGTT TCTAAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661994	NES14646301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37040841					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661994	NES14646301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143417577 () rs orientation: forward

Symbol	Name	Function Class
Gm6260	predicted gene 6260	within coordinates
Rr586554	regulatory region 586554	1352 bp proximal