rs3704074 SNP Detail

Summary

• ID
  rs3704074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127304418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCACAGG CTTTCCCCGT GAGAGGCTGA GGGGTGCGGT
  GTCTACCTTG GGCTGGCTCT TTCTCAAGTA GACCACAAGA GGGCGGTAGC ACCCTCCTAG
  Y
  GTCACAGGAG GATTTAGCCA CACAGCCTGC AGCTAACAGA GGACTGACTG TCCCTGCGAG
  GCCTCTGGAG GACCTCATTT GTCAAGGGAA GCAGCACAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5080294	WI_WGS_2_128442268	WI	MOUSE	f	SNP			C	T
ss147530675	ENSMUSSNP6979462	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3704074					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127304418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			within coordinates
Rr564529	regulatory region 564529			11 bp distal
Tssr20021	transcription start site region 20021			492 bp upstream