rs37035133 SNP Detail

Summary

• ID
  rs37035133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151949812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGAGA CACTGTTTTA
  TAAATCTCTG GGGAATCATC ATCTAATACC TATTTAAAAT AAATATTTTT TTCAGAATTG
  TGCATACTAA AAAGTTATTC CTTCTAGACT GGGGTATCTG TGATATGGAG GATAACCATG
  TACATCAGTT CTCCATTGAA ATGAACAAAA CATGCTCCAT TTTTATACAT TGAATCATTT
  R
  AATCAGAAAT TGATGTTCTT TAATCATATT AAAAATATTT TTGTTGGATT GAAGTGAATC
  TCCAAAATCA TAGTCTTACT GAGTTACATC TGTATCGTCA TAAGCTTTTA TCAGAAAAAA
  GCAGTGCCAT GATGCCATTT AATTGTGCAG TTTTGCTGCC AAGATGTTTT AAAGACATAA
  TAGTTCATAT ATTCCTACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060326	NES13426280	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37035133					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060326	NES13426280	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151949812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nexn	nexilin			Intron
				Noncoding-Transcript-Variant
Rr587498	regulatory region 587498			1161 bp proximal
Rr587499	regulatory region 587499			1509 bp proximal
Rr587500	regulatory region 587500			1675 bp proximal
Rr587501	regulatory region 587501			1967 bp proximal
Tssr36172	transcription start site region 36172			1356 bp upstream
Tssr36173	transcription start site region 36173			314 bp upstream
Tssr36174	transcription start site region 36174			277 bp upstream
Tssr36175	transcription start site region 36175			188 bp upstream
Tssr36176	transcription start site region 36176			171 bp upstream
Tssr36177	transcription start site region 36177			142 bp upstream
Tssr36178	transcription start site region 36178			97 bp upstream