rs3703405 SNP Detail

Summary

• ID
  rs3703405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127304303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTGACAT TTCTTACCCT CTTAAGCTTG AGGAATGATC
  ACCAAAGTGT GGGTGTGGTT TACCCAAGCA GAGAAGATTC AAAGTCACCC CGAAAGCATG
  M
  CCTCCACCCT GCCCATTCCA CAGGCTTTCC CCGTGAGAGG CTGAGGGGTG CGGTGTCTAC
  CTTGGGCTGG CTCTTTCTCA AGTAGACCAC AAGAGGGCG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5079621	WI_WGS_2_128442153	WI	MOUSE	f	SNP			C	A
ss45227764	mCV25209065	ABI	CRAMUS_MOUSE	f	SNP	A	A		A	C
ss147530663	ENSMUSSNP4210881	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3703405					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127304303 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			within coordinates
Rr564529	regulatory region 564529			83 bp proximal
Tssr20021	transcription start site region 20021			607 bp upstream