rs37025577 SNP Detail

Summary

• ID
  rs37025577
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87655306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTTTAAT AGTTTTCTTT AAGCGTGCCA AAGCACAACT
  GTGACCATGG CCACAGAGAA GACACTCAAA AGTAACTGTT GTCTAAATGA ATATCCATAG
  W
  GCTGTGTTCC TAAACCTTCC CACAGCCCCA CGGGATCTTC TCACCACTGC CTCAGCCTTC
  TTTGACCTAT CTTGTCACAT CTTACAGTGC ACGTCAGCTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51576164	NES14670753	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37025577					SNP	T	T	T	T	A	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576164	NES14670753	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87655306 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	614 bp proximal
Rr579536	regulatory region 579536	995 bp proximal
Rr579537	regulatory region 579537	1203 bp proximal
Tssr33946	transcription start site region 33946	534 bp downstream
Tssr33947	transcription start site region 33947	557 bp downstream
Tssr33948	transcription start site region 33948	578 bp downstream
Tssr33949	transcription start site region 33949	600 bp downstream
Tssr33950	transcription start site region 33950	620 bp downstream