rs37022332 SNP Detail

Summary

• ID
  rs37022332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113302506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAAAAT TAACTCGCCA
  AAGTTCCTAC AACTAAGAAG TTGGAGAGCT AGGACTTAAA CCCAGGTCTC TTTGTCTGGA
  AAGGTGTCTT TTCAGCTAGC ACCTAAGACC AGATGAGTCC ATTACTGCCA TCTTATGGGA
  TTCAGTTGCT TCAAGTCCTT TGTTAGGACT GTAGCTGAAG GGCTTCAGAC ACTTCAGTTG
  R
  AAACAAAGTA GGTGTGTACC AGCCTGTTAA TGCACATGCA ACCTTGGCGT TTTTCCTAAC
  TTAAAGTCTT GTTGGAGAGA ATGCCTTCTC AGTGCCAGGC ACCTGTAAGG TGACATGCCT
  TTAGATGAGG TAATCACAGT AAAACATGGA TGCTGAGAGC CTTACAGCTA CTGCTTAATG
  AAACTGAGAC AAAAGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51842367	NES14762177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs37022332					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842367	NES14762177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113302506 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	685 bp downstream
Cpgi17839	CpG island 17839	721 bp proximal
Gm15492	predicted gene 15492	within coordinates
Ogg1	8-oxoguanine DNA-glycosylase 1	1453 bp upstream
Rr399830	regulatory region 399830	1040 bp upstream
Rr636489	regulatory region 636489	438 bp proximal
Rr636490	regulatory region 636490	1177 bp proximal
Tssr58194	transcription start site region 58194	1445 bp upstream
Tssr58195	transcription start site region 58195	1474 bp upstream
Tssr58196	transcription start site region 58196	1680 bp upstream
Tssr58197	transcription start site region 58197	1698 bp upstream
Tssr62435	transcription start site region 62435	1090 bp downstream
Tssr62436	transcription start site region 62436	1181 bp downstream