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rs37022062 SNP Detail
Summary
  • ID
    rs37022062
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:135594211 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTCCTATA AGCCCAAACA
    CATTTTCATG TAATAACAGT GCAGATTTGA TAAACTTTAA CATATATGTT TATGTGTATT
    CTCACTTTAT GACTGACAAT TAAAAAATAT TATTTGACCA AACAGTAAAA GCTTTTGAAA
    CCATGTACCG TGTCAGTTAT TTTTCTCTTA ATATGTCTTT ATTTTGAGTG ACATCATGTG
    S
    CTGGTGTTAT GAGAAGAGAG GCAAGTAGAG AACTGATGTT GTATTATTTT AAAAATATCT
    AGCAAAAAAA TCCTACAAAG ACTAATTTTT CATTTCAATA AACACAATCT ATATTAGTAT
    AACCTTTCGT TTCAGTGCTT AACAATCCTT GCTTTTTAAA AGTATATGCT GTGGGCTGGA
    GATATGGCTC AGTGGTTAAG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51646574 NES14650951 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G C G G C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37022062 SNP G G G G G G G G G G C G G C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51646574 NES14650951 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:135594211 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr585796 regulatory region 585796 217 bp distal
Rr585797 regulatory region 585797 1668 bp distal
Slc39a8 solute carrier family 39 (metal ion transporter), member 8 mRNA-UTR
Tssr31861 transcription start site region 31861 1357 bp downstream
Tssr31862 transcription start site region 31862 1239 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory