rs37021402 SNP Detail

Summary

• ID
  rs37021402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15182589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATCTGT GTCACAGGAA
  ATCATCACCA GTCTCTTGCA AGGAGCATGC TAATAGGCTA ATTCATCGTC AAGAAATTCA
  AAGATGTTTA AGGTTTTTGC TATTAGAAAG AAGAAGAGAT TATAACAAGA CAAAGGAAAA
  AAACATAATA TTCTGGTTTA CAACCTGTTT CTGAAATCGT CACTGCCCTT TTGGAAGACC
  Y
  AAGTTAAGGT TTTTCCACTG GGTGATAGCA TCCCCTGACC ACATACCTTG CCACGGGGGT
  TATAAAATAA AAGGGGCTTT ATTATCTAAG GTAATGTAGT TACAGTCTCT TATGTTAGGT
  AGATTTTGGT TGTGAAAACT GGCATGGAGA ATCTATCATT TTCTTCAATA ACCTGCAGTT
  ATTCCCAGGT GATACTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51242631	NES13801342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37021402					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242631	NES13801342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15182589 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			189 bp proximal
Rr626647	regulatory region 626647			1567 bp proximal
Tssr54974	transcription start site region 54974			1980 bp upstream