rs37006708 SNP Detail

Summary

• ID
  rs37006708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69765316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGGATT ACAGACACAT
  TTTGCTGTGT CTTTTTAGGT AGTTGCTGGG GATTTGACTT GGGTCATCAT GCTTGCATGT
  ACTTTACTCT TTGAAACATC TATACAGCCC CAATCCTTAA AAATGAAGAC ACACACACAC
  ACACACACAC ACACACACAC ACACACATTT GCCTGCAAAA CTTTTTTACT GTCTTTGTTA
  R
  TTGGCCATGG ACTTATAAAG GGTAGTTTTT ATTTTAAAAT TACGAAAGTT GTAAGCAGTA
  GGGAGCTACA GACTGGCTAA TTTCTACTTG ACGCACAGTA AAATTCTAAA CGTGCATTTG
  CCTTAACTTG ACATTTTTAA TTTAACTTAA TTTAATTACA TTGGAATTAA TTATTTAGTT
  GTTTAGAAAG ATTTGAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977804	NES13927122	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37006708					SNP	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977804	NES13927122	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69765316 () rs orientation: forward

Symbol	Name	Function Class
Gm52608	predicted gene, 52608	1527 bp downstream
Rr578229	regulatory region 578229	1750 bp proximal
Rr578230	regulatory region 578230	1929 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	1872 bp downstream
Tssr33557	transcription start site region 33557	887 bp downstream
Tssr33558	transcription start site region 33558	1892 bp downstream